Some of the settings in the company settings reoccur in Accept Mission when creating or editing an inbox or a project for example.
Currently these are the entities that can be set up the way you desire (they are located in the company settings):
Categories & Departments (general settings)
Status (inbox settings)
Strategic Domains (innovation strategy)
Stages (project settings)
If you wish to add, edit or remove fields that are connected to either of the five entities presented in the list above, you can do so by going into your settings.